af2rave.simulation module
==========================


Utilities for creating simulation box
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.. automodule:: af2rave.simulation.utils
   :members:
   :undoc-members: TopologyMap
   :show-inheritance:


Tools for unbiased simulation
------------------------------

.. automodule:: af2rave.simulation.simulation
   :members:
   :undoc-members:
   :show-inheritance:

OpenMM reporters
----------------

.. automodule:: af2rave.simulation.reporter
   :members:
   :undoc-members:
   :show-inheritance: