af2rave Documentation

Contents:

• Overview
  • Installation
  • Bibliography
• Usage
  • Feature selection module
  • Preparing for MD simulation
  • Running the MD simulation
  • AMINO module
  • Running State Predicted Information Bottleneck (SPIB)
• Package Contents
  • af2rave.alphafold module
  • af2rave.feature module
  • af2rave.simulation module
  • af2rave.amino module
  • af2rave.spib module
  • af2rave.colvar module
• Credits
  • Development Lead
  • Contributors
• History
  • 0.1.0 (2025-02-03)

Indices and tables

• Index

• Module Index

• Search Page